Index

_ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | Z

_

__init__() (AssimilationProcess method)
(BackgroundErrorModelNumpy method)
(DEnKF method)
(ETKF method)
(EnKF method)
(ErrorModelsBase method)
(ExplicitRungeKutta method)
(FDVAR method)
(FatODE_ERK_ADJ method)
(FilteringProcess method)
(FiltersBase method), [1]
(HMCFilter method)
(HMCSmoother method)
(KalmanFilter method)
(LIRK method)
(LLSEnKF method)
(Lorenz3 method)
(Lorenz96 method)
(ModelErrorModelNumpy method)
(ModelsBase method)
(Momentum method), [1]
(MultiChainMCMC method)
(ObservationErrorModelNumpy method)
(ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(ObservationVectorBase method)
(ObservationVectorNumpy method)
(PF method)
(QG1p5 method)
(QGBackgroundErrorModel method)
(QGModelErrorModel method)
(QGObservationErrorModel method)
(SmoothersBase method)
(SmoothingProcess method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
(StateVectorBase method)
(StateVectorNumpy method)
(TimeIntegratorBase method)
(URLDownload method)

A

abs() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
add() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
(StateVectorBase method)
(StateVectorNumpy method)
add_ensemble() (in module dates.src.Utility._utility_stat)
add_filter_to_filters_list() (in module dates.src.Utility.dates_utility)
add_model_to_models_list() (in module dates.src.Utility.dates_utility)
add_scheme_to_hybrid_schemes_list() (in module dates.src.Utility.dates_utility)
add_scheme_to_variational_schemes_list() (in module dates.src.Utility.dates_utility)
add_smoother_to_smoothers_list() (in module dates.src.Utility.dates_utility)
add_src_paths() (in module dates.dates_setup)
addAlphaI() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
aggregate_configurations() (in module dates.src.Utility._utility_configs)
analysis() (DEnKF method)
(ETKF method)
(EnKF method)
(FDVAR method)
(FiltersBase method), [1]
(HMCFilter method)
(HMCSmoother method)
(KalmanFilter method)
(LLSEnKF method)
(MultiChainMCMC method)
(PF method)
(SmoothersBase method)
apply_observation_covariance_localization() (ModelsBase method)
apply_state_covariance_localization() (Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
assimilation_cycle() (AssimilationProcess method)
(FilteringProcess method)
(SmoothingProcess method)
AssimilationProcess (class in dates.src.Assimilation.Assimilation_Processes.assimilation_process_base)
axpy() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)

B

BackgroundErrorModelNumpy (class in dates.src.Error_Models.Numpy.error_models_numpy)

C

calculate_localization_coefficients() (in module dates.src.Utility._utility_data_assimilation)
calculate_rmse() (in module dates.src.Utility._utility_data_assimilation)
cholesky() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
clean_executable_files() (in module dates.src.Utility.dates_utility)
cleanup_directory() (in module dates.src.Utility._utility_file_IO)
cond() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
construct_error_covariances() (BackgroundErrorModelNumpy method)
(ErrorModelsBase method)
(ModelErrorModelNumpy method)
(ObservationErrorModelNumpy method)
(QGBackgroundErrorModel method)
(QGModelErrorModel method)
(QGObservationErrorModel method)
construct_model_grids() (ModelsBase method)
(QG1p5 method)
construct_observation_operator() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
construct_observation_operator_Jacobian() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
construct_observational_grid() (QG1p5 method)
copy() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
(StateVectorBase method)
(StateVectorNumpy method)
covariance_trace() (in module dates.src.Utility._utility_data_assimilation)
create_background_error_model() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
create_initial_condition() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
create_initial_ensemble() (Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
create_model_error_model() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
create_observation_error_model() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
create_synthetic_observations() (in module dates.src.Utility._utility_data_assimilation)
cross() (ObservationVectorBase method)
(StateVectorBase method)
cycle_postprocessing() (FiltersBase method), [1]
(LLSEnKF method)
(PF method)
(SmoothersBase method)
cycle_preprocessing() (FiltersBase method), [1]
(LLSEnKF method)
(PF method)
(SmoothersBase method)

D

dates.dates_setup (module)
dates.src.Assimilation.Assimilation_Processes.assimilation_process_base (module)
dates.src.Assimilation.Assimilation_Processes.filtering_process (module)
dates.src.Assimilation.Assimilation_Processes.smoothing_process (module)
dates.src.Assimilation.Assimilation_Schemes.Filters.filters_base (module), [1]
dates.src.Assimilation.Assimilation_Schemes.Filters.Kalman_Filters.EnKF (module)
dates.src.Assimilation.Assimilation_Schemes.Filters.Kalman_Filters.KF (module)
dates.src.Assimilation.Assimilation_Schemes.Filters.MCMC.HMC_Sampling_Filters.hmc_filter (module)
dates.src.Assimilation.Assimilation_Schemes.Filters.MCMC.HMC_Sampling_Filters.multi_chain_mcmc_filter (module)
dates.src.Assimilation.Assimilation_Schemes.Filters.Particle_Filters.PF (module)
dates.src.Assimilation.Assimilation_Schemes.Smoothers.Sampling_Schemes.MCMC.HMC_Smoothing.hmc_smoother (module)
dates.src.Assimilation.Assimilation_Schemes.Smoothers.smoothers_base (module)
dates.src.Assimilation.Assimilation_Schemes.Smoothers.Variational_Schemes.fourD_var (module)
dates.src.Assimilation.Assimilation_Schemes.Smoothers.Variational_Schemes.threeD_var (module)
dates.src.Error_Models.error_models_base (module)
dates.src.Error_Models.Numpy.error_models_numpy (module)
dates.src.Linear_Algebra.Numpy.observation_matrix_numpy (module)
dates.src.Linear_Algebra.Numpy.observation_vector_numpy (module)
dates.src.Linear_Algebra.Numpy.state_matrix_numpy (module)
dates.src.Linear_Algebra.Numpy.state_vector_numpy (module)
dates.src.Linear_Algebra.observation_matrix_base (module)
dates.src.Linear_Algebra.observation_vector_base (module)
dates.src.Linear_Algebra.Sparse_Scipy.observation_matrix_sp_scipy (module)
dates.src.Linear_Algebra.Sparse_Scipy.state_matrix_sp_scipy (module)
dates.src.Linear_Algebra.state_matrix_base (module)
dates.src.Linear_Algebra.state_vector_base (module)
dates.src.Models_Forest.0D.Lorenz.lorenz_models (module)
dates.src.Models_Forest.2D.QG_1p5.qg_1p5_error_models (module)
dates.src.Models_Forest.2D.QG_1p5.qg_1p5_model (module)
dates.src.Models_Forest.models_base (module)
dates.src.Time_Integration.FATODE.fatode_erk_adjoint (module)
dates.src.Time_Integration.Numpy.explicit_runge_kutta (module)
dates.src.Time_Integration.Numpy.linear_implicit_runge_kutta (module)
dates.src.Time_Integration.time_integration_base (module)
dates.src.Utility._utility_configs (module)
dates.src.Utility._utility_data_assimilation (module)
dates.src.Utility._utility_file_IO (module)
dates.src.Utility._utility_machine_learning (module)
dates.src.Utility._utility_optimization (module)
dates.src.Utility._utility_stat (module)
dates.src.Utility._utility_url (module)
dates.src.Utility.dates_utility (module)
DEnKF (class in dates.src.Assimilation.Assimilation_Schemes.Filters.Kalman_Filters.EnKF)
det() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
diag() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
diagonal() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
dot() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
download() (URLDownload method)
download_QG_samples() (QG1p5 static method)

E

eig() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
EnKF (class in dates.src.Assimilation.Assimilation_Schemes.Filters.Kalman_Filters.EnKF)
ensemble_covariance_dot_state() (in module dates.src.Utility._utility_data_assimilation)
ensemble_covariance_matrix() (Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
ensemble_mean() (in module dates.src.Utility._utility_stat)
ensemble_precisions() (in module dates.src.Utility._utility_stat)
ensemble_variances() (in module dates.src.Utility._utility_stat)
error_covariances_inv_prod_vec() (BackgroundErrorModelNumpy method)
(ErrorModelsBase method)
(ModelErrorModelNumpy method)
(ObservationErrorModelNumpy method)
(QGBackgroundErrorModel method)
(QGModelErrorModel method)
(QGObservationErrorModel method)
error_covariances_prod_vec() (BackgroundErrorModelNumpy method)
(ErrorModelsBase method)
(ModelErrorModelNumpy method)
(ObservationErrorModelNumpy method)
(QGBackgroundErrorModel method)
(QGModelErrorModel method)
(QGObservationErrorModel method)
error_covariances_sqrt_prod_vec() (BackgroundErrorModelNumpy method)
(ErrorModelsBase method)
(ModelErrorModelNumpy method)
(ObservationErrorModelNumpy method)
(QGBackgroundErrorModel method)
(QGModelErrorModel method)
(QGObservationErrorModel method)
ErrorModelsBase (class in dates.src.Error_Models.error_models_base)
ETKF (class in dates.src.Assimilation.Assimilation_Schemes.Filters.Kalman_Filters.EnKF)
evaluate_kinetic_energy() (Momentum method), [1]
evaluate_likelihood() (MultiChainMCMC method)
evaluate_observation_operator_Jacobian() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
evaluate_prior_pdf() (MultiChainMCMC method)
evaluate_theoretical_observation() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
ExplicitRungeKutta (class in dates.src.Time_Integration.Numpy.explicit_runge_kutta)

F

FatODE_ERK_ADJ (class in dates.src.Time_Integration.FATODE.fatode_erk_adjoint)
FDVAR (class in dates.src.Assimilation.Assimilation_Schemes.Smoothers.Variational_Schemes.fourD_var)
fdvar_objective() (FDVAR method)
filtering_cycle() (EnKF method)
(FiltersBase method), [1]
(HMCFilter method)
(KalmanFilter method)
(LLSEnKF method)
(PF method)
FilteringProcess (class in dates.src.Assimilation.Assimilation_Processes.filtering_process)
FiltersBase (class in dates.src.Assimilation.Assimilation_Schemes.Filters.filters_base), [1]
forecast() (EnKF method)
(FDVAR method)
(FiltersBase method), [1]
(HMCFilter method)
(HMCSmoother method)
(KalmanFilter method)
(LLSEnKF method)
(PF method)
(SmoothersBase method)
format (ObservationMatrixSpSciPy attribute)
(StateMatrixSpSciPy attribute)
formulate_list_file_header() (in module dates.src.Utility.dates_utility)

G

Gaussian_accept_reject() (MultiChainMCMC method)
generate_ensemble() (in module dates.src.Utility._utility_stat)
generate_gmm_model_info() (in module dates.src.Utility._utility_machine_learning)
generate_momentum() (Momentum method), [1]
generate_noise_vec() (BackgroundErrorModelNumpy method)
(ErrorModelsBase method)
(ModelErrorModelNumpy method)
(ObservationErrorModelNumpy method)
(QGBackgroundErrorModel method)
(QGModelErrorModel method)
(QGObservationErrorModel method)
generate_prior_info() (EnKF method)
(HMCFilter method)
(HMCSmoother method)
get_default_QG1p5_parameters() (QG1p5 method)
get_list_of_subdirectories() (in module dates.src.Utility._utility_file_IO)
get_model_configs() (Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
get_model_grid() (QG1p5 method)
get_model_source_path() (in module dates.src.Utility.dates_utility)
get_neighbors_indexes() (Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
get_numpy_array() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
(StateVectorBase method)
(StateVectorNumpy method)
get_observational_grid() (Lorenz96 method)
(QG1p5 method)
get_observations_positions() (Lorenz96 method)
(QG1p5 method)
get_raw_matrix_ref() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
get_raw_vector_ref() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
GMM_clustering() (in module dates.src.Utility._utility_machine_learning)

H

HMCFilter (class in dates.src.Assimilation.Assimilation_Schemes.Filters.MCMC.HMC_Sampling_Filters.hmc_filter)
HMCSmoother (class in dates.src.Assimilation.Assimilation_Schemes.Smoothers.Sampling_Schemes.MCMC.HMC_Smoothing.hmc_smoother)
hook() (URLDownload method)

I

inflate_ensemble() (in module dates.src.Utility._utility_data_assimilation)
initialize_adjoint_configs() (in module dates.src.Time_Integration.FATODE.fatode_erk_adjoint)
initialize_dates() (in module dates.dates_setup)
initialize_momentum() (HMCFilter method)
(HMCSmoother method)
integrate() (TimeIntegratorBase method)
integrate_adj() (FatODE_ERK_ADJ method)
integrate_state() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
integrate_state_perturbations() (ModelsBase method)
inv() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
inv_mass_mat_prod_momentum() (Momentum method), [1]
inverse() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)

K

KalmanFilter (class in dates.src.Assimilation.Assimilation_Schemes.Filters.Kalman_Filters.KF)

L

likelihood() (PF method)
LIRK (class in dates.src.Time_Integration.Numpy.linear_implicit_runge_kutta)
LLSEnKF (class in dates.src.Assimilation.Assimilation_Schemes.Filters.Kalman_Filters.EnKF)
Lorenz3 (class in dates.src.Models_Forest.0D.Lorenz.lorenz_models)
Lorenz96 (class in dates.src.Models_Forest.0D.Lorenz.lorenz_models)
lu_factor() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
lu_solve() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)

M

mass_mat_prod_momentum() (Momentum method), [1]
matrix_product() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
matrix_product_matrix_transpose() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
max() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
min() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
ModelErrorModelNumpy (class in dates.src.Error_Models.Numpy.error_models_numpy)
ModelsBase (class in dates.src.Models_Forest.models_base)
Momentum (class in dates.src.Assimilation.Assimilation_Schemes.Filters.MCMC.HMC_Sampling_Filters.hmc_filter)
(class in dates.src.Assimilation.Assimilation_Schemes.Smoothers.Sampling_Schemes.MCMC.HMC_Smoothing.hmc_smoother)
MultiChainMCMC (class in dates.src.Assimilation.Assimilation_Schemes.Filters.MCMC.HMC_Sampling_Filters.multi_chain_mcmc_filter)
multiply() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
mvn_rand_vec() (in module dates.src.Utility._utility_stat)

N

norm2() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
(StateVectorBase method)
(StateVectorNumpy method)

O

objective_function_gradient() (FDVAR method)
objective_function_value() (FDVAR method)
observation_dimension() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
observation_matrix() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
observation_operator_Jacobian_prod_vec() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
observation_operator_Jacobian_T_prod_vec() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
observation_size() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
observation_vector() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
observation_vector_size() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
ObservationErrorModelNumpy (class in dates.src.Error_Models.Numpy.error_models_numpy)
ObservationMatrixBase (class in dates.src.Linear_Algebra.observation_matrix_base)
ObservationMatrixNumpy (class in dates.src.Linear_Algebra.Numpy.observation_matrix_numpy)
ObservationMatrixSpSciPy (class in dates.src.Linear_Algebra.Sparse_Scipy.observation_matrix_sp_scipy)
ObservationVectorBase (class in dates.src.Linear_Algebra.observation_vector_base)
ObservationVectorNumpy (class in dates.src.Linear_Algebra.Numpy.observation_vector_numpy)

P

PF (class in dates.src.Assimilation.Assimilation_Schemes.Filters.Particle_Filters.PF)
prepare_model_files() (in module dates.src.Utility.dates_utility)
presolve() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
print_cycle_results() (EnKF method)
(FDVAR method)
(FiltersBase method), [1]
(HMCFilter method)
(HMCSmoother method)
(KalmanFilter method)
(LLSEnKF method)
(MultiChainMCMC method)
(PF method)
(SmoothersBase method)
prod() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
propagate_ensemble() (in module dates.src.Utility._utility_data_assimilation)

Q

QG1p5 (class in dates.src.Models_Forest.2D.QG_1p5.qg_1p5_model)
QGBackgroundErrorModel (class in dates.src.Models_Forest.2D.QG_1p5.qg_1p5_error_models)
QGModelErrorModel (class in dates.src.Models_Forest.2D.QG_1p5.qg_1p5_error_models)
QGObservationErrorModel (class in dates.src.Models_Forest.2D.QG_1p5.qg_1p5_error_models)
query_yes_no() (in module dates.src.Utility.dates_utility)

R

random_orthonormal_matrix() (in module dates.src.Utility._utility_data_assimilation)
random_orthonormal_mean_preserving_matrix() (in module dates.src.Utility._utility_data_assimilation)
rank_hist() (in module dates.src.Utility._utility_data_assimilation)
read_assimilation_configurations() (in module dates.src.Utility._utility_configs)
read_cycle_results() (EnKF method)
(FDVAR method)
(FiltersBase method), [1]
(KalmanFilter method)
(LLSEnKF method)
(SmoothersBase method)
read_ensemble_states() (in module dates.src.Utility._utility_file_IO)
read_filters_list() (in module dates.src.Utility.dates_utility)
read_hybrid_schemes_list() (in module dates.src.Utility.dates_utility)
read_models_list() (in module dates.src.Utility.dates_utility)
read_observation() (ModelsBase method)
read_smoothers_list() (in module dates.src.Utility.dates_utility)
read_state() (ModelsBase method)
read_variational_schemes_list() (in module dates.src.Utility.dates_utility)
reciprocal() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
recursive_assimilation_process() (AssimilationProcess method)
(FilteringProcess method)
(SmoothingProcess method)
resample_states() (PF static method)

S

save_cycle_results() (EnKF method)
(FDVAR method)
(FiltersBase method), [1]
(HMCFilter method)
(HMCSmoother method)
(KalmanFilter method)
(LLSEnKF method)
(MultiChainMCMC method)
(PF method)
(SmoothersBase method)
scale() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
(StateVectorBase method)
(StateVectorNumpy method)
schur_product() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
set_coeffs() (ExplicitRungeKutta method)
(LIRK method)
(TimeIntegratorBase method)
set_diag() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
set_diagonal() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
set_filtering_output_dir() (FilteringProcess method)
set_options() (TimeIntegratorBase method)
set_raw_matrix_ref() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
set_raw_vector_ref() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
set_smoothing_output_dir() (SmoothingProcess method)
shape (ObservationMatrixBase attribute)
(ObservationMatrixNumpy attribute)
(ObservationMatrixSpSciPy attribute)
(ObservationVectorBase attribute)
(ObservationVectorNumpy attribute)
(StateMatrixBase attribute)
(StateMatrixNumpy attribute)
(StateMatrixSpSciPy attribute)
(StateVectorBase attribute)
(StateVectorNumpy attribute)
size (ObservationMatrixBase attribute)
(ObservationMatrixNumpy attribute)
(ObservationVectorBase attribute)
(ObservationVectorNumpy attribute)
(StateMatrixBase attribute)
(StateMatrixNumpy attribute)
(StateVectorBase attribute)
(StateVectorNumpy attribute)
smoothering_cycle() (HMCSmoother method)
SmoothersBase (class in dates.src.Assimilation.Assimilation_Schemes.Smoothers.smoothers_base)
smoothing_cycle() (FDVAR method)
(SmoothersBase method)
SmoothingProcess (class in dates.src.Assimilation.Assimilation_Processes.smoothing_process)
solve() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
sqrt() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
square() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
state_dimension() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
state_matrix() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
state_size() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
state_vector() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
state_vector_size() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
StateMatrixBase (class in dates.src.Linear_Algebra.state_matrix_base)
StateMatrixNumpy (class in dates.src.Linear_Algebra.Numpy.state_matrix_numpy)
StateMatrixSpSciPy (class in dates.src.Linear_Algebra.Sparse_Scipy.state_matrix_sp_scipy)
StateVectorBase (class in dates.src.Linear_Algebra.state_vector_base)
StateVectorNumpy (class in dates.src.Linear_Algebra.Numpy.state_vector_numpy)
step_forward_function() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
step_forward_function_Jacobian() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
str_type (ObservationMatrixBase attribute)
(ObservationMatrixNumpy attribute)
(ObservationMatrixSpSciPy attribute)
(StateMatrixBase attribute)
(StateMatrixNumpy attribute)
(StateMatrixSpSciPy attribute)
sub_iterate() (ExplicitRungeKutta method)
(FatODE_ERK_ADJ method)
(LIRK method)
(TimeIntegratorBase method)
sum() (ObservationVectorBase method)
(ObservationVectorNumpy method)
(StateVectorBase method)
(StateVectorNumpy method)
svd() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)

T

TimeIntegratorBase (class in dates.src.Time_Integration.time_integration_base)
transpose() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
transpose_matrix_product() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
transpose_vector_product() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)
try_file_name() (in module dates.src.Utility._utility_file_IO)
two_var_covariance() (LLSEnKF static method)

U

update_forcing_term() (FatODE_ERK_ADJ method)
update_mass_matrix() (Momentum method), [1]
update_momentum() (HMCFilter method)
(HMCSmoother method)
update_observation_operator() (Lorenz3 method)
(Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
URLDownload (class in dates.src.Utility._utility_url)

V

validate_assimilation_configs() (FilteringProcess static method)
(SmoothingProcess static method)
validate_assimilation_configurations() (in module dates.src.Utility._utility_configs)
validate_filter_configs() (FiltersBase static method), [1]
validate_gradient() (in module dates.src.Utility._utility_optimization)
validate_output_configs() (FilteringProcess static method)
(FiltersBase static method), [1]
(SmoothersBase static method)
(SmoothingProcess static method)
validate_smoother_configs() (SmoothersBase static method)
VBGMM_clustering() (in module dates.src.Utility._utility_machine_learning)
vector_product() (ObservationMatrixBase method)
(ObservationMatrixNumpy method)
(ObservationMatrixSpSciPy method)
(StateMatrixBase method)
(StateMatrixNumpy method)
(StateMatrixSpSciPy method)

W

write_dates_configs_template() (in module dates.src.Utility._utility_configs)
write_dicts_to_config_file() (in module dates.src.Utility._utility_configs)
write_observation() (Lorenz96 method)
(ModelsBase method)
(QG1p5 method)
write_parameters() (QG1p5 method)
write_state() (Lorenz96 method)
(ModelsBase method)
(QG1p5 method)

Z

zip_dir() (in module dates.src.Utility._utility_file_IO)