Questions for the Buhler and M. Tompa (2) paper
Q1 (The 1 page limit per answer does NOT apply for this question)
Work out a detailed example of a (6,2) problem instance. Use the
following other values: t = 10, n = 12, s = 3. You should show all
sequences, all buckets and their contents (for just one trial), and
determine what buckets will be refined. You don't have to show the
refinement of buckets.
Q2
Explain how similar and/or different the real biological problems
addressed in the paper are from the synthetic problems.