Questions for the Buhler and M. Tompa (2) paper


Q1 (The 1 page limit per answer does NOT apply for this question)

Work out a detailed example of a (6,2) problem instance. Use the following other values: t = 10, n = 12, s = 3. You should show all sequences, all buckets and their contents (for just one trial), and determine what buckets will be refined. You don't have to show the refinement of buckets.

Q2 Explain how similar and/or different the real biological problems addressed in the paper are from the synthetic problems.