Questions for the Gillespie DT paper
Q1
If a chemically reacting system is given with N species and M
reaction channels, estimate the corresponding computational
complexity of the SSA, the tau-leaping and the explicit Euler methods
in N and M.
Q2
Write codes (in C, C++ or Fortran) for the SSA, tau-leaping
methods for discrete chemically reacting model and explicit Euler
method for a set of ODEs. Try your codes on the decaying
dimerization model in this paper. Modify the initial populations of
X1, X2 and X3. What range of the population values should be in such
that the tau-leaping method has efficiency advantages than the SSA
and the explicit Euler method?