• Santos, Eugene S. and Santos, Eunice E. “Conditional Validity Functions and Schafer Dempster Theory of Evidence”, Proceedings on the Conference on Fuzzy Logic Programming, 1989.

• Culler, David E., Karp, Richard M., Patterson, David A., Sahay, Abhijit, Schauser, Klaus E., Santos, Eunice E., Subramonian, Ramesh and von Eiken, Thorsten “LogP: Towards a Realistic Model of Parallel Computation”, Proceedings of the Fourth Annual ACM-SIGPLAN Symposium on the Principles and Practices of Parallel Programming, 1993.

• Karp, Richard M., Sahay, Abhijit, Santos, Eunice E. and Schauser, Klaus E. “Optimal Broadcast and Summation in the LogP Model”, Proceedings of the Fifth Annual ACM Symposium on Parallel Algorithms and Architectures, 1993.

• Santos, Eunice E. “Solving Triangular Linear Systems in Parallel using Substitution”, Proceedings of the Seventh IEEE Symposium on Parallel and Distributed Processing, 1995.

• Santos, Eunice E. “Optimal and Efficient Parallel Algorithms for Summing and Prefix Summing”, Proceedings of the Eighth IEEE Symposium on Parallel and Distributed Processing, 1996.

• Culler, David E., Karp, Richard M., Patterson, David A., Sahay, Abhijit, Santos, Eunice E., Schauser, Klaus E., Subramonian, Ramesh and von Eiken, Thorsten “LogP: A Practical Model of Parallel Computation”, Communications of the Association for Computing Machinery, vol. 37, no. 11, p. 78-85, 1996.

• Santos, Eunice E. “Determining Parallel Complexity on the LogP Model”, Lecture Notes from the Summer Institute on ParaDise (Parallel Discrete Algorithms), 1996 (invited).

• Santos, Eunice E. “Optimal Parallel Algorithms for Matrix Multiplication”, Proceedings of the Eighth SIAM Conference on Parallel Processing and Scientific Computing, 1997.

• Santos, Eunice E. “Triangular Solvers on a Ring”, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1997.

• Santos, Eunice E. “Parallel Algorithms and NP-Completeness”, Proceedings of the Ninth International Conference on Parallel and Distributed Computing Systems, 1997.

• Santos, Eunice E. “On the Complexity of Determining Communication Schedules on the Hypercube”, Proceedings of the Tenth ISCA International Conference on Parallel and Distributed Computing Systems, 1997.

• Santos, Eunice E. “Optimal Parallel Algorithms for Solving Tridiagonal Linear Systems”, Springer-Verlag Lecture Notes in Computer Science #1300, pages 700-709, 1997 (Proceedings of Euro-Par97).

• Santos, Eunice E. and Santos, Evelyn W. “Optimal Algorithms for Solving Tridiagonal Linear Systems on a Ring”, Proceedings of the Eleventh Conference on Mathematical and Computer Modelling and Scientific Computing, 1997.

• Santos, Eunice E. and Santos, Evelyn W. “Designing Optimal Parallel Tridiagonal Solvers on a Ring”, Mathematical Modelling and Scientific Computing, vol. 8, p 319-24, 1997.

• Santos, Eunice E. and Santos, Eugene S. “Optimal Triangular Solvers on a Torus”, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1998.

• Santos, Eunice E. “Solving Tridiagonal Linear Systems in Parallel on a Torus”, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1998.

• Santos, Eunice E. and Santos, Eugene S. “Designing Parallel Triangular Solvers for a Torus Interconnection Network”, Poster Proceedings of the Twelth International High Performance Computing Systems Conference, 1998.

• Santos, Eunice E. “Optimal and Efficient Triangular Solvers on a 3-Dimensional Torus Network”, Proceedings of High Performance Computing ASIA, 1998.

• Santos, Eunice E. “On Lower Bounds on Running Time for General Numerical Computation Problems”, Proceedings of the Ninth SIAM Conference on Parallel Processing and Scientific Computing, 1999.

• Santos, Eunice E. “Optimal Tridiagonal Solvers on Mesh Interconnection Networks”, Springer-Verlag Lecture Notes in Computer Science #1557 (Proceedings of ACPC’99), 1999.

• Santos, Eunice E. “Optimal and Near-Optimal Algorithms for the k-item Broadcast Problem”, Journal on Parallel and Distributed Computing, vol. 57, no. 2, p. 121-139, 1999.

• Santos, Eunice E. and Chu, Pei-Yue Pauline “Efficient Parallel Algorithms for Cholesky Decomposition”, Springer-Verlag Lecture Notes in Computer Science #1557 (Proceedings of ACPC’99), 1999.

• Santos, Eunice E., Lu, Lin, and Santos, Eugene, Jr. “Efficiency of Parallel Genetic Algorithms For Protein Folding on 2-D HP Model,” Proceedings of the The Third International Workshop on Frontiers of Evolutionary Algorithms, 2000.

• Santos, Eunice E. and Santos, Eugene, Jr. “Cache Diversity in Genetic Algorithm Design,” Proceedings of the 13th International FLAIRS Conference, 2000.

• Santos, Eunice E. “On Designing Optimal Parallel Triangular Solvers”, Information and Computation, vol. 161, no. 2, p. 172-210, 2000.

• Santos, Eunice E., Santos, Eugene, Jr., and Santos, Eugene S. “Parallel Complexity for Solving Tridiagonal Linear Systems with Multiple Right-Hand Sides on 2-D Torus Interconnection Networks,” Proceedings of High Performance Computing ASIA, 2000.

• Santos, Eunice E. “Complexity Issues for Designing Tridiagonal Solvers on Two-Dimensional Mesh Interconnection Networks”, Journal of Computing and Information Technology, vol. 8, no. 1, p. 1-12, 2000.

• Santos, Eunice E. “Determining Optimal and Efficient Communication Schedules for Parallel Algorithms”, International Journal of Parallel and Distributed Processing Systems and Networks, vol. 3, no. 1, p. 39-44, 2000.

• Santos, Eunice E. “Tridiagonal Solvers on k-dimensional Mesh and Torus Networks”, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2000.

• Santos, Eunice E., and Santos, Eugene S. “Designing Banded Triangular Solvers on 2-D Torus Networks,” Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2000.

• Santos, Eunice E. “Designing Generalized Tridiagonal Solvers on the Hypercube”, Proceedings of the 13th Conference on Parallel and Distributed Computing and Systems, 2000.

• Santos, Eunice E., and Santos, Eugene, Jr., “Effective and Efficient Caching in Genetic Algorithms”, International Journal of Artificial Intelligence and Tools, vol. 10, no. 1-2, p. 273-301, 2001.

• Santos, Eunice E., Santos, Eugene S., and Santos Jr., Eugene “Optimal Parallel Tridiagonal Solvers on Binary Trees”, Proceedings of the Conference on Parallel and Distributed Computing, Applications, and Techniques, 2001.

• Santos, Eunice E. “A Classification Framework for Parallel & Distributed Algorithm Design”, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2001.

• Santos, Eunice E., Santos, Eugene S., and Santos Jr., Eugene“Optimal Banded Triangular Solvers on Rings”, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2001.

• Santos, Eunice E., and Chu, Pei-Yue Pauline “Efficient Parallel Looping Algorithms for Cholesky Decomposition,” Proceedings of the 14th Conference on Parallel and Distributed Computing and Systems, 2001.

• Santos, Eunice E., Santos Jr., Eugene, and Santos, Eugene S. “Designing Optimal Algorithms for Banded Triangular Systems on Rings”, Journal on Mathematical Modeling and Algorithms, vol. 1, no. 3, p. 169-180, 2002.

• Santos, Eunice E., Feng, Shuangtong, and Rickman, Jeffrey M. “Efficient Parallelization of 2-Dimensional Ising Spin Systems”, Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2002.

• Santos Jr., Eugene, and Santos, Eugene S., and Santos, Eunice E. “On the Efficiency and Scalability of Abductive Reasoning with Linear Programming”, Proceedings of the International Conference on Artificial Intelligence, 2002.

• Santos, Eunice E. “Optimal and Efficient Algorithms for Summing and Prefix Summing on Parallel Machines”, Journal of Parallel and Distributed Computing, vol. 64, no. 2, p. 517-543, 2002.

• Santos, Eunice E., Santos, Eugene S., and Santos Jr., Eugene “Solving Banded Triangular Systems on 3-D Torus Networks”, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2002.

• Santos, Eunice E., Santos, Eugene S., and Santos Jr., Eugene “General Tridiagonal Solvers on Rings,” Proceedings of the 15th Conference on Parallel and Distributed Computing and Systems, 2002.

• Santos Jr., Eugene, Kim, Keum Joo, and Santos, Eunice E, “Effective Search of the Energy Landscape for Protein Folding,” Springer-Verlag Lecture Notes in Computer Science #2723 (Proceedings of the Genetic and Evolutionary Computing Conference), 2003.

• Santos, Eunice E., and Santos, Eugene S., ”Solvers for Triangular Systems on k-Dimensional Torus Networks”, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2003.

• Santos, Eunice E. “Parallel Complexity of Matrix Multiplication”, Journal of Supercomputing, vol. 25, no. 2, p. 155-176, 2003.

• Santos Jr., Eugene, Kim, Keum Joo, and Santos, Eunice E, “Local Minima-Based Exploration for Off-Lattice Protein Folding,” Proceedings of the IEEE Computer Society Computational Systems Boinformatics Conference, 2003.

• Santos, Eunice E., and Chu, Pei-Yue, “Efficient and Optimal Parallel Algorithms for Cholesky Decomposition,” Journal on Mathematical Modelling and Algorithms, vol. 2, no. 3, p. 217-234, 2003.

• Santos, Eunice E., and Santos, Eugene S., “Optimal Banded Triangular Solvers for k-Dimensional Torus Networks”, Proceedings of the Fifteenth International Conference on Parallel and Distributed Computing and Systems, 2003.

• Davenport, JamesW., Deng, Yuefan, Glimm, James W., and Santos, Eunice E. “Classical Molecular Dynamics on QCDOC”, Proceedings on the Workshop on Large-Scale Computations in Nuclear Physics Using the QCDOC, 2003.

• Santos, Eunice E. “Tridiagonal Solvers with Multiple Right Hand Sides for k-dimensional Mesh and Torus Interconnection Networks,” Parallel Processing Letters, vol. 13, no. 4, p. 659-672, 2003.

• Santos, Eunice E., and Muthukrishnan, Gayathri, “Efficient Simulation Based on Sweep Selection for 2-D and 3-D Ising Spin Models on Hierarchical Clusters”, Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2004.

• Gravannis, George, and Santos, Eunice E., “Guest Editors’ Letter”, Journal of Supercomputing, volume 30, number 2, 2004.

• Santos, Eugene, Jr., Santos, Eunice E., and Santos, Eugene S., “Distributed Real-Time Large-Scale Information Processing and Analysis,” Proceedings of the SPIE Defense & Security Symposium, Orlando, FL, 2004.

• Santos, Eunice E., and Santos Jr., Eugene “Reducing the Computational Load of Energy Evaluations for Protein Folding”, Proceedings of the Fourth IEEE Symposium on Bioinformatics and Bioengineering, 2004.

• Muthukrishnan, Gayathri, and Santos, Eunice E., “On Simulating Hierarchical Clusters for Performance of Ising Spin Systems,” Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2004.

• Santos, Eunice E. “Optimal and Efficient Parallel Tridiagonal Solvers using Direct Methods”, Journal of Supercomputing, vol. 30, no. 2, 97-115, 2004.

• Santos, Eunice E., Guo, Donghang, Santos Jr., Eugene, and Onesty, William, “ A Multi-Agent System Environment for Modelling Cell and Tissue Biology,” Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2004.

• Gravannis, George, and Santos, Eunice E., Special Issue on Selected Papers of the 2002 International Conference on Parallel and Distributed Processing Techniques and Applications, Journal of Supercomputing, vol. 30, no. 2, 2004.

• Deng, Yuefan, Glimm, James, Davenport, James, Cai, X., and Santos, Eunice E., “Performance Models on QCDOC for Moleculer Dynamics with Coulomb Potentials,” International Journal of High Performance Computing and Applications, vol. 18, no. 2, p. 183-195, 2004.

• Santos, Eugene, Jr., Santos, Eunice E., Nguyen, Hien, Pan, Long and Korah, John, “ Large Scale Distributed Foraging, Gathering, and Matching for Information Retrieval: Assisting the Geo-Spatial Intelligence Analyst,” Proceedings of the SPIE Defense & Security Symposium, Orlando, FL, 2005.

• Santos, Eunice E., Rickman, Jeffrey M., Muthukrishnan, Gayathri, and Feng, Shuangtong, “ Efficient Algorithms for the Parallelizing of Monte Carlo Simulations for 2-D Ising Spin Models”, Journal of Supercomputing, in revision.