I am a Ph.D. student in the department of computer science at Virginia Tech. I am privileged and very fortunate to work under the supervision of my advisor Dr. Debswapna Bhattacharya. My research interests are

>Bioinformatics and Computational Biology
>Machine Learning
>Data Science and Big Data Analytics.

My current research mainly focused on protein model quality estimation and protein structure refinement, addressing sub-problems of computational protein structure prediction.

Google Scholar | ResearchGate | Twitter

PUBLICATIONS


    2021
  • Andriy Kryshtafovych,..., Md Hossain Shuvo., ...,
    Modeling SARS-CoV2 proteins in the CASP-commons experiment
    Proteins: Structure, Function, and Bioinformatics, (2021). [Impact Factor: 3.756]
    PDF
  • Md Hossain Shuvo, Muhammad Gulfam, Debswapna Bhattacharya.
    DeepRefiner: high-accuracy protein structure refinement by deep network calibration
    Nucleic Acids Research, Web Server Issue, gkab361 (2021). [Impact Factor: 16.971]
    PDF | Server
  • Sutanu Bhattacharya, Rahmatullah Roche, Md Hossain Shuvo, Debswapna Bhattacharya.
    Recent Advances in Protein Homology Detection Propelled by Inter-Residue Interaction Map Threading of protein structural models
    Frontiers in Molecular Biosciences, 8: 643752 (2021). [Impact Factor: 5.246]
    PDF | In memoriam of Cyrus Chothia
    2020
  • Md Hossain Shuvo, Sutanu Bhattacharya, Debswapna Bhattacharya.
    "QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks"
    ISMB Proceedings (2020), Bioinformatics, 36(S1): i285-i291 (2020). [Impact Factor: 6.937]
    PDF | GitHub
  • Rahul Alapati, Md Hossain Shuvo, Debswapna Bhattacharya.
    SPECS: Integration of side-chain orientation and global distance-based measures for improved evaluation of protein structural models
    PLOS ONE, 15(2): e0228245 (2020). [Impact Factor: 3.240]
    PDF | GitHub | Server

ACADEMICS


    EDUCATION
  • Ph.D. Student in the Department of Computer Science
    Virginia Polytechnic Institute and State University
    2021 - Present
  • M.Sc. in Computer Science
    Alabama A&M University
    2015 - 2017
  • B.Sc. in Computer Science and Engineering
    Bangladesh University of Business and Technology (BUBT)
    2010 - 2014
    AWARDS
  • Awarded fellowship for attending ISMB 2020 (Virtual conference)
    July 13-16, 2020
  • Awarded travel fellowship for attending IEEE SoutheastCon 2016. Norfolk, VA, USA
    March 30 - April 3, 2016
    POSTERS AND PRESENTATIONS
  • M. H. Shuvo, S. Bhattacharya, D. Bhattacharya, "QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks", ISMB 2020
    Slide | Presentation
    ACADEMIC EXPERIENCES
  • Graduate Research Assistant
    Virginia Polytechnic Institute and State University
    Aug 2021 - Present

    Graduate Research Assistant:
    Under the supervision of Dr. Debswapna Bhattacharya
    VTech: Aug 2021 - Present
    AU: Jan 2018 - Jul 2021

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  • Graduate Teaching and Research Assistant
    Auburn University
    Jan 2018 - Aug 2021

    Graduate Research Assistant:
    Under the supervision of Dr. Debswapna Bhattacharya (Jan 2018 - present)
    Graduate Teaching Assistant:
    >COMP1210: Fundamentals of Computing I: Fall 2018, Spring 2019, Fall 2019, Spring 2020
    >COMP 5970/6970: Computational Biology

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  • Graduate Assistant
    Alabama Agricultural and Mechanical University
    Aug 2015 - Jul 2017
  • Lecturer, Dept. of Stat, Math & Com
    Dhaka Commerce College
    Jan 2015 - Aug 2015
  • Lecturer, Dept. of ICT
    Dhaka Cambrian College
    Aug 2014-Dec 2014

CONTACTS

mhshuvo[AT]vt.edu