BLASTN 2.2.16 [Mar-11-2007] Reference: Aaron E. Darling, Lucas Carey, and Wu-chun Feng, "The design, implementation, and evaluation of mpiBLAST." In Proceedings of The 4th International Conference on Linux Clusters: The HPC Revolution, June 24-26 2003, San Jose, CA Query= gi|10726333|gb|AE003845.2|AE003845 Drosophila melanogaster genomic scaffold 142000013385266 section 1 of 3, complete sequence (720 letters) Database: /Users/jsarch/Projects/VT/code/mpiBLAST-1.x/dbs/yeast.nt 17 sequences; 12,155,026 total letters Score E Sequences producing significant alignments: (bits) Value ref|NC_001134.1| Saccharomyces cerevisiae chromosome II, complet... 36 0.11 ref|NC_001144.1| Saccharomyces cerevisiae chromosome XII, comple... 34 0.44 ref|NC_001136.2| Saccharomyces cerevisiae chromosome IV, complet... 34 0.44 ref|NC_001146.1| Saccharomyces cerevisiae chromosome XIV, comple... 32 1.7 ref|NC_001224.1| Saccharomyces cerevisiae mitochondrion, complet... 32 1.7 ref|NC_001141.1| Saccharomyces cerevisiae chromosome IX, complet... 32 1.7 ref|NC_001143.1| Saccharomyces cerevisiae chromosome XI, complet... 32 1.7 ref|NC_001148.1| Saccharomyces cerevisiae chromosome XVI, comple... 32 1.7 ref|NC_001139.1| Saccharomyces cerevisiae chromosome VII, comple... 30 6.8 ref|NC_001147.1| Saccharomyces cerevisiae chromosome XV, complet... 30 6.8 ref|NC_001142.1| Saccharomyces cerevisiae chromosome X, complete... 30 6.8 ref|NC_001145.1| Saccharomyces cerevisiae chromosome XIII, compl... 30 6.8 >ref|NC_001134.1| Saccharomyces cerevisiae chromosome II, complete chromosome sequence Length = 813140 Score = 36.2 bits (18), Expect = 0.11 Identities = 18/18 (100%) Strand = Plus / Minus Query: 629 aaatgcaggtgcgataat 646 |||||||||||||||||| Sbjct: 641813 aaatgcaggtgcgataat 641796 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Minus Query: 568 ggaatttccaaaaaca 583 |||||||||||||||| Sbjct: 458847 ggaatttccaaaaaca 458832 >ref|NC_001144.1| Saccharomyces cerevisiae chromosome XII, complete chromosome sequence Length = 1078172 Score = 34.2 bits (17), Expect = 0.44 Identities = 17/17 (100%) Strand = Plus / Plus Query: 267 gaccaacagtacttaca 283 ||||||||||||||||| Sbjct: 766591 gaccaacagtacttaca 766607 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Plus Query: 204 tttctattggcactct 219 |||||||||||||||| Sbjct: 343027 tttctattggcactct 343042 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 271 aacagtacttacagc 285 ||||||||||||||| Sbjct: 109631 aacagtacttacagc 109617 Score = 30.2 bits (15), Expect = 6.8 Identities = 18/19 (94%) Strand = Plus / Plus Query: 175 ttttggtaaattttcaatc 193 ||||||||||| ||||||| Sbjct: 208799 ttttggtaaatgttcaatc 208817 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 461 aatggcaccaaaata 475 ||||||||||||||| Sbjct: 419373 aatggcaccaaaata 419359 >ref|NC_001136.2| Saccharomyces cerevisiae chromosome IV, complete chromosome sequence Length = 1531929 Score = 34.2 bits (17), Expect = 0.44 Identities = 20/21 (95%) Strand = Plus / Plus Query: 616 agttcgaattattaaatgcag 636 |||| |||||||||||||||| Sbjct: 184179 agttggaattattaaatgcag 184199 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Minus Query: 606 gttcgggcaaagttcg 621 |||||||||||||||| Sbjct: 235635 gttcgggcaaagttcg 235620 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Minus Query: 643 taattcagaaattggt 658 |||||||||||||||| Sbjct: 1438009 taattcagaaattggt 1437994 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 502 tctttcatctaatgg 516 ||||||||||||||| Sbjct: 974459 tctttcatctaatgg 974445 Score = 30.2 bits (15), Expect = 6.8 Identities = 18/19 (94%) Strand = Plus / Minus Query: 641 gataattcagaaattggta 659 ||||||| ||||||||||| Sbjct: 1380296 gataattgagaaattggta 1380278 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 455 actgacaatggcacc 469 ||||||||||||||| Sbjct: 1443413 actgacaatggcacc 1443399 >ref|NC_001146.1| Saccharomyces cerevisiae chromosome XIV, complete chromosome sequence Length = 784328 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Plus Query: 615 aagttcgaattattaa 630 |||||||||||||||| Sbjct: 415571 aagttcgaattattaa 415586 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 539 ttttccagaatttcg 553 ||||||||||||||| Sbjct: 110270 ttttccagaatttcg 110256 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 58 gaaatatggtgtttt 72 ||||||||||||||| Sbjct: 125325 gaaatatggtgtttt 125339 >ref|NC_001224.1| Saccharomyces cerevisiae mitochondrion, complete genome Length = 85779 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Plus Query: 35 tattcatgtgtattaa 50 |||||||||||||||| Sbjct: 15864 tattcatgtgtattaa 15879 >ref|NC_001141.1| Saccharomyces cerevisiae chromosome IX, complete chromosome sequence Length = 439885 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Minus Query: 177 ttggtaaattttcaat 192 |||||||||||||||| Sbjct: 225297 ttggtaaattttcaat 225282 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 268 accaacagtacttac 282 ||||||||||||||| Sbjct: 95465 accaacagtacttac 95451 >ref|NC_001143.1| Saccharomyces cerevisiae chromosome XI, complete chromosome sequence Length = 666445 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Plus Query: 486 ttgttggtattaatgg 501 |||||||||||||||| Sbjct: 241479 ttgttggtattaatgg 241494 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 482 gtgtttgttggtatt 496 ||||||||||||||| Sbjct: 251792 gtgtttgttggtatt 251778 >ref|NC_001148.1| Saccharomyces cerevisiae chromosome XVI, complete chromosome sequence Length = 948061 Score = 32.2 bits (16), Expect = 1.7 Identities = 16/16 (100%) Strand = Plus / Minus Query: 78 aaactacaattttatt 93 |||||||||||||||| Sbjct: 232353 aaactacaattttatt 232338 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 122 tgagcagcttcaata 136 ||||||||||||||| Sbjct: 435236 tgagcagcttcaata 435250 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 32 tgatattcatgtgta 46 ||||||||||||||| Sbjct: 717762 tgatattcatgtgta 717776 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 133 aatatgtattgtaca 147 ||||||||||||||| Sbjct: 930158 aatatgtattgtaca 930172 >ref|NC_001139.1| Saccharomyces cerevisiae chromosome VII, complete chromosome sequence Length = 1090936 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 644 aattcagaaattggt 658 ||||||||||||||| Sbjct: 136097 aattcagaaattggt 136111 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 470 aaaatatgatcagtg 484 ||||||||||||||| Sbjct: 204612 aaaatatgatcagtg 204626 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 588 ggtattttgcattaa 602 ||||||||||||||| Sbjct: 906803 ggtattttgcattaa 906789 >ref|NC_001147.1| Saccharomyces cerevisiae chromosome XV, complete chromosome sequence Length = 1091283 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Minus Query: 177 ttggtaaattttcaa 191 ||||||||||||||| Sbjct: 148640 ttggtaaattttcaa 148626 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 469 caaaatatgatcagt 483 ||||||||||||||| Sbjct: 171666 caaaatatgatcagt 171680 >ref|NC_001142.1| Saccharomyces cerevisiae chromosome X, complete chromosome sequence Length = 745440 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 143 gtacataaaaaacca 157 ||||||||||||||| Sbjct: 128870 gtacataaaaaacca 128884 Score = 30.2 bits (15), Expect = 6.8 Identities = 18/19 (94%) Strand = Plus / Minus Query: 171 tgggttttggtaaattttc 189 |||||||||||| |||||| Sbjct: 527714 tgggttttggtacattttc 527696 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 565 ggtggaatttccaaa 579 ||||||||||||||| Sbjct: 558646 ggtggaatttccaaa 558660 >ref|NC_001145.1| Saccharomyces cerevisiae chromosome XIII, complete chromosome sequence Length = 924430 Score = 30.2 bits (15), Expect = 6.8 Identities = 15/15 (100%) Strand = Plus / Plus Query: 471 aaatatgatcagtgt 485 ||||||||||||||| Sbjct: 136631 aaatatgatcagtgt 136645 Database: /Users/jsarch/Projects/VT/code/mpiBLAST-1.x/dbs/yeast.nt Posted date: Jul 12, 2007 2:48 PM Number of letters in database: 4,034,586 Number of sequences in database: 5 Database: /Users/jsarch/Projects/VT/code/mpiBLAST- 1.x/dbs/yeast.nt.001 Posted date: Jul 12, 2007 2:48 PM Number of letters in database: 4,044,593 Number of sequences in database: 6 Database: /Users/jsarch/Projects/VT/code/mpiBLAST- 1.x/dbs/yeast.nt.002 Posted date: Jul 12, 2007 2:48 PM Number of letters in database: 4,075,847 Number of sequences in database: 6 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5930 Number of Sequences: 17 Number of extensions: 5930 Number of successful extensions: 34 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 34 length of query: 1442 length of database: 12,155,026 effective HSP length: 17 effective length of query: 703 effective length of database: 12,154,737 effective search space: 8544780111 effective search space used: 8544780111 T: 0 A: 0 X1: 11 (21.8 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 15 (30.2 bits)