############################################################################
############################################################################
# This is an example C-shell (tcsh) file that defines the shell environment
# Written by Alexey Onufriev for the intro UNIX course.
###########################################################################
# To make sure all the variables are set automatically every time you open
# a unix shell (terminal):


# INSTALLING THE C-SHELL.
# Copy this .cshrc.example into .cshrc file in your
# home directory and type "tcsh" at the prompt. You are using the C-shell now.
# Note that commands in .cshrc  will automatically  be
#  executed every time you login and start your shell (terminal).
# IMPORTANT: THE FILE MUST BE NAMED .cshrc
#  Also, DO NOT ERASE the original .cshrc.example: if you mess up the .cshrc
#  later on, you can always replace it with the original. It is possible
# to mess up the shell variables so that you won't be able to work in the
# shell, and  then the above trick may come in handy.
#
##################################################################
# The contents of .cshrc are executed
# when you start your shell; but if you want
# it executed immediately, do "source .cshrc" in your home directory. 
# This option is useful when you are changing setting
# in an existing C-shell and want to immediately test
# the effect of changes in the
# window you are currently using (any newley opened window will
# automatically inherit the new settings).   

# Of course, C-shell (tsch) is not the only shell available, but the syntax
# in this file corresponds to C-shell.
#
# If you want just some of the shell variables set up:
# Just cut and paste any command belwo on command line,
# and it will be executed by your shell. But you must make sure you are
# running a C-shell, since other shells have slightly different sysntax


#######################################################
# Now the gory details:
##########################################################
####
# SET umask here, because .login isn't read if you fire up xterms remotely
#umask 022 # allow everyone to read my files, only I can write
#umask 002 # allow only myself & my group to write, others read only
#umask 077  denes all access to group and others
umask 026 # allow only myself to write, group can read, others nothing

#set noclobber  prevents files to be over-written
#
#
# setup default printer here
#setenv PRINTER crick

setenv ARCH `arch` # test what flavour of unix you are on,
# and stores it in the environment variable $ARCH to be used by
# other programs running under your shell.

#setenv AMBERHOME /home/onufriev/amber9
#setenv MSMS_EXECUTABLE_PATH /usr/local/bin/msms.i86Linux2.2.5.5
#setenv MSMSSERVER /usr/local/bin/msms.i86Linux2.2.5.5
#if  ( ! $?LD_LIBRARY_PATH ) setenv LD_LIBRARY_PATH

#set path=( /opt/intel/compiler70/ia32/bin $path )
#setenv LD_LIBRARY_PATH "/opt/intel/compiler70/ia32/lib:${LD_LIBRARY_PATH}"

       set path = ( $path . /usr/local/bin /usr/bin /bin /usr/sbin /usr/X11R6/bin /usr/java/j2sdk1.4.2_02/bin/ )

# set PATH for a non-standard fortran library
#setenv LD_LIBRARY_PATH /usr/local/lf9562/lib

#VMD LOW GRADE GRAPHICS
#setenv VMDSIMPLEGRAPHICS 1


# Environment for Concurrent Version application CVS.
# CVS for my group
#setenv CVS_RSH ssh
#setenv CVSROOT :ext:chekhov:/home/onufriev/cvs
#setenv CVS_SERVER /usr/bin/cvs
#


#setenv MOZILLA_HOME /usr/lib/mozilla-1.2.1
#
set filec        #refers to filename completion
set history = 500
set savehist = 50
#setenv DISPLAY mayer:0.0

#

#
# Now platform specific stuff
# get unix flavor
set uname = `uname -a`
set osv = `echo $uname | awk '{print $1 substr($3,1,1)}'`
#echo "operating system = $osv"

        limit coredumpsize 1k
#
# set your aliases that customize many common commands.
alias setprompt 'set prompt="\! ${HOSTNAME}:"$cwd": "'
setprompt
# ALIASES
# These customize many common commands and define your own.

alias T exec tcsh

alias cd 'cd \!* ; setprompt'

alias h 'history | tail -20'
alias ls ls -CF
alias help man

# -i means query user if this clobbers existing file
alias mv mv -i
alias cp cp -i

# do not delete files, just move to dumpster
alias rm /bin/mv  \!:1 $HOME/dumpster

# blank screensaver. Saves compute cycles!
alias xlockb 'xlock -mode blank' 

# large fornt Xterm "Protect your eyes, you won't be given another pair". 
alias XT 'xterm -sb -fn r24 -fg green3 -bg black &'
alias xt  'xterm -sb -fg green3 -bg black &'

#xhost + bioinformatics.cs.vt.edu
#xhost + ap1.cs.vt.edu
stty intr '^c'