aaaaaa@cuda:~/workplace$ ./swat input1_256.txt input2_256.txt 5.0 0.5
Input string length, String1: 256, String2: 256

Alignment result is:
c-g---cgcg-ct-ggc-gcgagcgatc-t-cagtatccttagccgt-at
| |   |..| || ..| ||..||.|.| | ||| .||  || |||| .|
ctgattctagtctaaacggcttgcaaacatgcag-ctc--ta-ccgtggt

cccgacttatacaccgatccgagagacttccgtttgaacatcttggtgcg
   |||    .|.||   ||     .||  ||  || |||| |.||..| 
---gac----gcgcc---cc-----cct--cg--tg-acat-tgggatc-

acggcggtccatatcgccgtctagaggttat-tccctaactccacgcact
|||||   |  |....||  |||   |||.| |.||.|  |||...||| 
acggc---c--tgaaacc--cta---gttttgtaccga--tccttacac-

agatggtttc-aggtaaggc-gaga--cg-tac------t----cgtc-g
||..||..|| ||.|.|.|| |.||  || |.|      |    |..| |
agtaggcatcgagcttatgctgggactcgttgcagaaaattatccaactg

aag--ggcagagtcg-caacagc-cggcat-g----gaagcataggag--
.||  |..||||||| |..|.|| |||||| |    |.|||||    |  
gagtagatagagtcgccgcccgcgcggcatagtgttgtagcat----gct

----agcctt---cggctctcagcttcgtaagtatcaccgtt---cc-ga
    ||||||   |.|.|.||..|  |.|||||||    |||   || ||
atccagccttatgcagatgtctac--cctaagtat----gtttggccaga

aag
..|
cgg

output string length: 	  303
open gap penalty:      	  5.0
extension gap penalty: 	  0.5

Alignment score is: 	  717.0

Runtime: 		  22.18 ms